Puerto Flores, Ecuador offers 2 beaches perfect for sunbathing, surfing, swimming, and more. Puerto Flores, Galapagos, Ecuador, is known for its proximity to the Galapagos National Park and Charles Darwin Research Station. The best time to travel to Puerto Flores, Ecuador, is from June to September, with average air temperatures around 77°F (25°C) and water temperatures near 75°F (24°C). Sandee provides detailed maps, photos, and reviews from fellow beachgoers to help you Choose Your Beach™ and plan your perfect beach vacation!